Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
Total Cells
10,770
organism
Mus musculus
disease
normal
assay
10x 3' v2(5,385 cells)10x 3' v3(5,385 cells)
tissue
dorsal plus ventral thalamus(10,726 cells)midbrain(35 cells)hypothalamus(6 cells)striatum(2 cells)hippocampal formation(1 cells)
The top level of cell type definition in the mouse whole brain taxonomy. It is primarily determined by broad brain region and neurotransmitter type. All cells within a subclass belong to the same class. Class provides a broader categorization of cell types.
The finest level of cell type definition in the mouse whole brain taxonomy. Cells within a cluster share similar characteristics and belong to the same supertype.
The coarse level of cell type definition in the mouse whole brain taxonomy. All cells within a supertype belong to the same subclass. Subclass groups together related supertypes.
The second finest level of cell type definition in the mouse whole brain taxonomy. All cells within a cluster belong to the same supertype. Supertype groups together similar clusters.
