Lymphoid cells from human liver dataset

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Cell Metadata

Circulating TEM

Ontology Term: effector memory CD45RA-positive, alpha-beta T cell, terminally differentiatedCL:4030002
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Circulating TEM cell
Category Class of which the cell type is a subclass.: mature alpha-beta T cellCL:0000791
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SLC4A10, CCR6, DPP4, IL7R, PRR5, AQP3, CD40LG, SLAMF1, NCR3, KLRB1
Canonical Marker Genes: PTPRC
Rationale: Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: effector memory CD45RA-positive, alpha-beta T cell, terminally differentiatedCL:4030002
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Circulating TEM cell
Category Class of which the cell type is a subclass.: mature alpha-beta T cellCL:0000791
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SLC4A10, CCR6, DPP4, IL7R, PRR5, AQP3, CD40LG, SLAMF1, NCR3, KLRB1
Canonical Marker Genes: PTPRC
Rationale: Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual